post_process.h File Reference

#include "spring_electrical.h"

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Data Structures
struct	StressMajorizationSmoother_struct
struct	SpringSmoother_struct

Macros
#define	TriangleSmoother_struct   StressMajorizationSmoother_struct
#define	SparseStressMajorizationSmoother_struct   StressMajorizationSmoother_struct

Typedefs
typedef struct StressMajorizationSmoother_struct *	StressMajorizationSmoother
typedef StressMajorizationSmoother	TriangleSmoother
typedef struct SpringSmoother_struct *	SpringSmoother
typedef StressMajorizationSmoother	SparseStressMajorizationSmoother

Enumerations
enum	{   SM_SCHEME_NORMAL, SM_SCHEME_NORMAL_ELABEL, SM_SCHEME_UNIFORM_STRESS, SM_SCHEME_MAXENT,   SM_SCHEME_STRESS_APPROX, SM_SCHEME_STRESS }
enum	{ IDEAL_GRAPH_DIST, IDEAL_AVG_DIST, IDEAL_POWER_DIST }
enum	{ WEIGHTING_SCHEME_NONE, WEIGHTING_SCHEME_INV_DIST, WEIGHTING_SCHEME_SQR_DIST }

Functions
void	StressMajorizationSmoother_delete (StressMajorizationSmoother sm)
StressMajorizationSmoother	StressMajorizationSmoother2_new (SparseMatrix A, int dim, real lambda, real *x, int ideal_dist_scheme)
real	StressMajorizationSmoother_smooth (StressMajorizationSmoother sm, int dim, real *x, int maxit, real tol)
void	TriangleSmoother_delete (TriangleSmoother sm)
TriangleSmoother	TriangleSmoother_new (SparseMatrix A, int dim, real lambda, real *x, int use_triangularization)
void	TriangleSmoother_smooth (TriangleSmoother sm, int dim, real *x)
SpringSmoother	SpringSmoother_new (SparseMatrix A, int dim, spring_electrical_control ctrl, real *x)
void	SpringSmoother_delete (SpringSmoother sm)
void	SpringSmoother_smooth (SpringSmoother sm, SparseMatrix A, real *node_weights, int dim, real *x)
void	post_process_smoothing (int dim, SparseMatrix A, spring_electrical_control ctrl, real *node_weights, real *x, int *flag)
void	SparseStressMajorizationSmoother_delete (SparseStressMajorizationSmoother sm)
SparseStressMajorizationSmoother	SparseStressMajorizationSmoother_new (SparseMatrix A, int dim, real lambda, real *x, int weighting_scheme, int scale_initial_coord)
real	SparseStressMajorizationSmoother_smooth (SparseStressMajorizationSmoother sm, int dim, real *x, int maxit_sm, real tol)
real	get_stress (int m, int dim, int *iw, int *jw, real *w, real *d, real *x, real scaling, void *data, int weighted)
real	get_full_stress (SparseMatrix A, int dim, real *x, int weighting_scheme)
void	dump_distance_edge_length (char *outfile, SparseMatrix A, int dim, real *x)

Macro Definition Documentation

#define SparseStressMajorizationSmoother_struct   StressMajorizationSmoother_struct

Definition at line 78 of file post_process.h.

#define TriangleSmoother_struct   StressMajorizationSmoother_struct

Definition at line 47 of file post_process.h.

Referenced by TriangleSmoother_new().

Typedef Documentation

typedef StressMajorizationSmoother SparseStressMajorizationSmoother

Definition at line 76 of file post_process.h.

typedef struct SpringSmoother_struct* SpringSmoother

Definition at line 64 of file post_process.h.

typedef struct StressMajorizationSmoother_struct* StressMajorizationSmoother

Definition at line 36 of file post_process.h.

typedef StressMajorizationSmoother TriangleSmoother

Definition at line 45 of file post_process.h.

Enumeration Type Documentation

anonymous enum

Enumerator
SM_SCHEME_NORMAL
SM_SCHEME_NORMAL_ELABEL
SM_SCHEME_UNIFORM_STRESS
SM_SCHEME_MAXENT
SM_SCHEME_STRESS_APPROX
SM_SCHEME_STRESS

Definition at line 19 of file post_process.h.

anonymous enum

Enumerator
IDEAL_GRAPH_DIST
IDEAL_AVG_DIST
IDEAL_POWER_DIST

Definition at line 40 of file post_process.h.

anonymous enum

Enumerator
WEIGHTING_SCHEME_NONE
WEIGHTING_SCHEME_INV_DIST
WEIGHTING_SCHEME_SQR_DIST

Definition at line 82 of file post_process.h.

Function Documentation

void dump_distance_edge_length	(	char *	outfile,
		SparseMatrix	A,
		int	dim,
		real *	x
	)

real get_full_stress	(	SparseMatrix	A,
		int	dim,
		real *	x,
		int	weighting_scheme
	)

real get_stress	(	int	m,
		int	dim,
		int *	iw,
		int *	jw,
		real *	w,
		real *	d,
		real *	x,
		real	scaling,
		void *	data,
		int	weighted
	)

Definition at line 765 of file post_process.c.

References dist(), distance(), and real.

Referenced by StressMajorizationSmoother_smooth().

void post_process_smoothing	(	int	dim,
		SparseMatrix	A,
		spring_electrical_control	ctrl,
		real *	node_weights,
		real *	x,
		int *	flag
	)

Definition at line 1268 of file post_process.c.

References FALSE, IDEAL_AVG_DIST, IDEAL_GRAPH_DIST, IDEAL_POWER_DIST, SparseMatrix_struct::m, real, spring_electrical_control_struct::smoothing, SMOOTHING_RNG, SMOOTHING_SPRING, SMOOTHING_STRESS_MAJORIZATION_AVG_DIST, SMOOTHING_STRESS_MAJORIZATION_GRAPH_DIST, SMOOTHING_STRESS_MAJORIZATION_POWER_DIST, SMOOTHING_TRIANGLE, SpringSmoother_delete(), SpringSmoother_new(), SpringSmoother_smooth(), StressMajorizationSmoother2_new(), StressMajorizationSmoother_delete(), StressMajorizationSmoother_smooth(), TriangleSmoother_delete(), TriangleSmoother_new(), TriangleSmoother_smooth(), TRUE, and Verbose.

void SparseStressMajorizationSmoother_delete

(

SparseStressMajorizationSmoother

sm

)

Definition at line 652 of file post_process.c.

References StressMajorizationSmoother_delete().

Referenced by stress_model_core().

SparseStressMajorizationSmoother SparseStressMajorizationSmoother_new	(	SparseMatrix	A,
		int	dim,
		real	lambda,
		real *	x,
		int	weighting_scheme,
		int	scale_initial_coord
	)

Definition at line 513 of file post_process.c.

References SparseMatrix_struct::a, assert, StressMajorizationSmoother_struct::D, StressMajorizationSmoother_struct::data, dist(), distance(), drand(), FALSE, FORMAT_CSR, SparseMatrix_struct::ia, int, SparseMatrix_struct::ja, StressMajorizationSmoother_struct::lambda, StressMajorizationSmoother_struct::Lw, StressMajorizationSmoother_struct::Lwd, SparseMatrix_struct::m, MALLOC, MATRIX_TYPE_REAL, StressMajorizationSmoother_struct::maxit_cg, NULL, SparseMatrix_struct::nz, real, StressMajorizationSmoother_struct::scaling, StressMajorizationSmoother_struct::scheme, SM_SCHEME_NORMAL, SparseMatrix_is_symmetric(), SparseMatrix_new(), StressMajorizationSmoother_delete(), StressMajorizationSmoother_struct::tol_cg, SparseMatrix_struct::type, WEIGHTING_SCHEME_INV_DIST, WEIGHTING_SCHEME_NONE, and WEIGHTING_SCHEME_SQR_DIST.

Referenced by stress_model_core().

real SparseStressMajorizationSmoother_smooth	(	SparseStressMajorizationSmoother	sm,
		int	dim,
		real *	x,
		int	maxit_sm,
		real	tol
	)

Definition at line 657 of file post_process.c.

References StressMajorizationSmoother_smooth().

Referenced by stress_model_core().

void SpringSmoother_delete

(

SpringSmoother

sm

)

Definition at line 1249 of file post_process.c.

References SpringSmoother_struct::ctrl, SpringSmoother_struct::D, SparseMatrix_delete(), and spring_electrical_control_delete().

Referenced by post_process_smoothing(), and SpringSmoother_new().

SpringSmoother SpringSmoother_new	(	SparseMatrix	A,
		int	dim,
		spring_electrical_control	ctrl,
		real *	x
	)

Definition at line 1141 of file post_process.c.

References SparseMatrix_struct::a, assert, SpringSmoother_struct::ctrl, SpringSmoother_struct::D, distance(), FALSE, for(), FORMAT_CSR, FREE, SparseMatrix_struct::ia, ID, ideal_distance_matrix(), SparseMatrix_struct::ja, SparseMatrix_struct::m, MATRIX_TYPE_REAL, spring_electrical_control_struct::maxiter, spring_electrical_control_struct::multilevels, N_GNEW, NULL, SparseMatrix_struct::nz, spring_electrical_control_struct::random_start, real, SparseMatrix_delete(), SparseMatrix_is_symmetric(), SparseMatrix_new(), spring_electrical_control_new(), SpringSmoother_delete(), and spring_electrical_control_struct::step.

Referenced by post_process_smoothing().

void SpringSmoother_smooth	(	SpringSmoother	sm,
		SparseMatrix	A,
		real *	node_weights,
		int	dim,
		real *	x
	)

Definition at line 1258 of file post_process.c.

References assert, SpringSmoother_struct::ctrl, SpringSmoother_struct::D, and spring_electrical_spring_embedding().

Referenced by post_process_smoothing().

StressMajorizationSmoother StressMajorizationSmoother2_new	(	SparseMatrix	A,
		int	dim,
		real	lambda,
		real *	x,
		int	ideal_dist_scheme
	)

Definition at line 320 of file post_process.c.

References SparseMatrix_struct::a, assert, StressMajorizationSmoother_struct::data, dist(), distance(), distance_cropped(), FALSE, FORMAT_CSR, FREE, GNEW, SparseMatrix_struct::ia, ID, IDEAL_AVG_DIST, ideal_distance_matrix(), IDEAL_GRAPH_DIST, IDEAL_POWER_DIST, int, SparseMatrix_struct::ja, StressMajorizationSmoother_struct::lambda, StressMajorizationSmoother_struct::Lw, StressMajorizationSmoother_struct::Lwd, SparseMatrix_struct::m, MATRIX_TYPE_REAL, StressMajorizationSmoother_struct::maxit_cg, N_GNEW, NULL, SparseMatrix_struct::nz, real, StressMajorizationSmoother_struct::scaling, StressMajorizationSmoother_struct::scheme, SM_SCHEME_NORMAL, SparseMatrix_delete(), SparseMatrix_is_symmetric(), SparseMatrix_new(), StressMajorizationSmoother_delete(), and StressMajorizationSmoother_struct::tol_cg.

Referenced by post_process_smoothing().

void StressMajorizationSmoother_delete

(

StressMajorizationSmoother

sm

)

Definition at line 1017 of file post_process.c.

References StressMajorizationSmoother_struct::data, StressMajorizationSmoother_struct::data_deallocator, FREE, StressMajorizationSmoother_struct::lambda, StressMajorizationSmoother_struct::Lw, StressMajorizationSmoother_struct::Lwd, and SparseMatrix_delete().

Referenced by post_process_smoothing(), SparseStressMajorizationSmoother_delete(), SparseStressMajorizationSmoother_new(), StressMajorizationSmoother2_new(), TriangleSmoother_delete(), UniformStressSmoother_delete(), and UniformStressSmoother_new().

real StressMajorizationSmoother_smooth	(	StressMajorizationSmoother	sm,
		int	dim,
		real *	x,
		int	maxit,
		real	tol
	)

Definition at line 812 of file post_process.c.

References SparseMatrix_struct::a, assert, StressMajorizationSmoother_struct::data, dist(), distance(), drand(), FALSE, FREE, get_stress(), SparseMatrix_struct::ia, if(), SparseMatrix_struct::ja, StressMajorizationSmoother_struct::lambda, StressMajorizationSmoother_struct::Lw, StressMajorizationSmoother_struct::Lwd, SparseMatrix_struct::m, MALLOC, StressMajorizationSmoother_struct::maxit_cg, MEMCPY, N_GNEW, NULL, real, StressMajorizationSmoother_struct::scaling, StressMajorizationSmoother_struct::scheme, SM_SCHEME_MAXENT, SM_SCHEME_NORMAL_ELABEL, SM_SCHEME_STRESS, SM_SCHEME_STRESS_APPROX, SM_SCHEME_UNIFORM_STRESS, SOLVE_METHOD_CG, SparseMatrix_add(), SparseMatrix_copy(), SparseMatrix_delete(), SparseMatrix_multiply_dense(), SparseMatrix_solve(), StressMajorizationSmoother_struct::tol_cg, vector_product(), and Verbose.

Referenced by post_process_smoothing(), SparseStressMajorizationSmoother_smooth(), TriangleSmoother_smooth(), and UniformStressSmoother_smooth().

void TriangleSmoother_delete

(

TriangleSmoother

sm

)

Definition at line 1126 of file post_process.c.

References StressMajorizationSmoother_delete().

Referenced by post_process_smoothing(), and TriangleSmoother_new().

TriangleSmoother TriangleSmoother_new	(	SparseMatrix	A,
		int	dim,
		real	lambda,
		real *	x,
		int	use_triangularization
	)

Definition at line 1027 of file post_process.c.

References SparseMatrix_struct::a, assert, call_tri(), call_tri2(), StressMajorizationSmoother_struct::data, dist(), distance(), distance_cropped(), FALSE, FREE, SparseMatrix_struct::ia, if(), int, SparseMatrix_struct::ja, StressMajorizationSmoother_struct::lambda, StressMajorizationSmoother_struct::Lw, StressMajorizationSmoother_struct::Lwd, SparseMatrix_struct::m, StressMajorizationSmoother_struct::maxit_cg, N_GNEW, NULL, real, StressMajorizationSmoother_struct::scaling, StressMajorizationSmoother_struct::scheme, SM_SCHEME_NORMAL, SparseMatrix_add(), SparseMatrix_copy(), SparseMatrix_delete(), SparseMatrix_is_symmetric(), StressMajorizationSmoother_struct::tol_cg, TriangleSmoother_delete(), and TriangleSmoother_struct.

Referenced by post_process_smoothing().

void TriangleSmoother_smooth	(	TriangleSmoother	sm,
		int	dim,
		real *	x
	)

Definition at line 1132 of file post_process.c.

References StressMajorizationSmoother_smooth().

Referenced by post_process_smoothing().